{"text_format":"1","workbook":"xlsx","n_sheets":34,"sheets":["Cover","Winbugs Settings ","DATA Input","Diagram Data","WINBUGS data","WINBUGS Data Inconsistency","Data Summary","Network Diagram","Forest Plot","League Table","Rankogram","Inconsistency Data","Inconsistency Results","FE Results","RE Results (Vague Prior)","RE Results (Informative Prior)","FE Inconsistency Results","RE Inconsistency Results","Informative Priors","Data Table","FE Script","RE Script","FE Inconsistency Script ","RE Inconsistency Script","FE Model","Fixed Effects","RE Model","League Table Data","Random Effects  (Informative)","Random Effects (Vague)","FE Inconsistency Model","RE Inconsistency Model","Rankogram Data","Variables"],"not_rendered":{"charts":4,"images":5,"macros":1,"external_links":0,"defined_names":117,"comments":0,"pivot_tables":0},"unopened":[],"bounds":{"document_bytes":16777216,"sheet_cells":100000,"rows_first":2000,"rows_last":500,"rows_between":2000,"halvings":0,"cell_chars":16384,"cell_head_chars":4096},"cells_cut":0,"cells_raw":0,"read":"whole","date_system":"1900"}

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[null,null,"DISCLAIMER:"]
[null,null,"1. NO WARRANTIES\nNetMetaXL (HEREINAFTER CALLED \"THIS PROGRAM\") IS PROVIDED FREE OF CHARGE AND “AS IS” WITHOUT ANY WARRANTY WHATSOEVER. YOU ASSUME ALL RISKS AND RESPONSIBILITIES FOR SELECTION OF THIS PROGRAM TO ACHIEVE YOUR INTENDED RESULTS, AND FOR THE INSTALLATION OF, USE OF AND RESULTS OBTAINED FROM THIS PROGRAM. THE CREATORS OF THIS PROGRAM MAKE NO WARRANTY THAT THIS PROGRAM WILL BE ERROR FREE OR FREE FROM INTERRUPTION OR FAILURE. TO THE MAXIMUM EXTENT PERMITTED BY APPLICABLE LAW, THE CREATORS OF THIS PROGRAM DISCLAIMS ALL WARRANTIES, EITHER EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO, WARRANTIES OR REPRESENTATIONS OF WORKMANSHIP, SUITABILITY OR FITNESS FOR A PARTICULAR PURPOSE, DURABILITY, AND NON INFRINGEMENT WITH RESPECT TO THIS PROGRAM. WITHOUT LIMITING THE GENERALITY OF THE FOREGOING, THE CREATORS OF THIS PROGRAM DO NOT WARRANT THAT THIS PROGRAM WILL MEET ALL OF YOUR NEEDS OR THAT OPERATION OF THIS PROGRAM WILL BE ERROR-FREE.  THE CREATORS OF THIS PROGRAM EXPRESSLY DISCLAIMS ANY EXPRESS OR IMPLIED WARRANTY REGARDING SYSTEM AND/OR SOFTWARE AVAILABILITY, ACCESSIBILITY, OR PERFORMANCE. THE CREATORS OF THIS PROGRAM RESERVES THE RIGHT TO REVISE THIS PROGRAM AND TO MAKE CHANGES THEREIN FROM TIME TO TIME WITHOUT OBLIGATION TO NOTIFY ANY PERSON OR ORGANISATION OF SUCH REVISION OR CHANGES.\n2. LIMITATIONS ON LIABILITY\nTO THE MAXIMUM EXTENT PERMITTED BY APPLICABLE LAW, IN NO EVENT WILL THE CREATORS OF THIS PROGRAM OR ITS SUPPLIERS OR LICENSORS BE LIABLE FOR ANY DAMAGES WHATSOEVER (INCLUDING, WITHOUT LIMITATION, DAMAGES FOR LOSS OF BUSINESS PROFITS, BUSINESS INTERRUPTION, LOSS OF BUSINESS INFORMATION, LOSS OF GOODWILL; WORK STOPPAGE; HARDWARE OR SOFTWARE FAILURE, OR OTHER PECUNIARY LOSS) ARISING OUT OF THE USE OR INABILITY TO USE THIS PROGRAM. YOU ASSUME THE ENTIRE COST OF ANY DAMAGE RESULTING FROM YOUR USE OF THIS PROGRAM AND THE INFORMATION CONTAINED IN OR COMPILED BY THIS PROGRAM.\n3. GENERAL\nTHE TERM OF THIS AGREEMENT SHALL CONTINUE FROM THE DATE OF ACCEPTANCE TO THE DATE AT WHICH YOU REMOVE THIS PROGRAM FROM YOUR COMPUTER. SECTION 2 HEREIN SHALL SURVIVE TERMINATION OF THIS AGREEMENT.  \n"]

{"sheet":"Winbugs Settings ","index":1,"n_rows":30,"n_cols":16,"rows_kept":30,"cut":false,"hidden":false,"merged":[[8,5,9,7],[29,5,29,7],[10,5,11,7],[13,5,16,7],[18,5,18,7],[19,5,20,7],[21,5,22,7]]}
[]
[null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,"Vague"]
[null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,"Informative"]
[]
[]
[]
[]
[null,"WinBUGS Settings"]
[null,null,"Burn In Runs",1000,null,"Enter the number of \"Burn In\" runs and Model Runs"]
[null,null,"Model Runs",1000]
[null,null,"Include Trace for OR",true,null,"Select \"True\" to monitor; Convergence traces for OR and RR and/or Gelman Rubin traces for OR and RR"]
[null,null,"Include Gelman Rubin for OR",true]
[null,"Inits Ranges"]
[null,null,"Low Range for Inits  (Random and Fixed Effects)",0,null,"Inits and SD are randomly selected between a low and high value.  These low and high values can be entered here"]
[null,null,"High range for Inits (Random and Fixed Effects)",2]
[null,null,"Low range for SD/VAR (Random Effects)",1]
[null,null,"High range for SD/VAR (Random Effects)",2]
[null,"Program Settings"]
[null,null,"Winbugs Directory","C:\\Program Files\\WinBUGS14\\"," ","Enter the path for the WinBUGS program or click folder to open Explorer window"]
[null,null,"Data directory","C:\\WinBUGS data\\",null,"Enter the path for the results and data files that excel generates  click folder to open Explorer window"]
[null,null,"Results Directoty","C:\\WinBUGS Results\\"]
[null,null,"Fixed Effects Results File Name","Fixed Effect Results",null,"Enter the name of the results files"]
[null,null,"Random Effects Results File Name","Random Effect Results"]
[null,null,"Fixed Effects Model File Name","Fixed Effect Model"]
[null,null,"Random Effects Model File Name","Random Effect Model"]
[null,null,"Data Table File Name","Data Table"]
[null,null,"Data table List File Name","Data List"]
[null,null,"Fixed Effects Inits File name","Fixed Effect Inits"]
[null,null,"Random Effects Inits File name","Random Effect Inits"]
[null,null,"Include date/time Stamp",true,null,"Uniquely labels each set of results with date/time of analysis"]

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[]
[null,null,{"$f":"COUNTIF(D7:D56,\"<>\")","v":15},"Number of Studies"]
[null,null,{"$f":"COUNTIF(E5:AH5,\"<>\")","v":5},"Number of Treatments","Treatments"]
[null,null,{"$f":"COUNTIF(F7:F56,\"<>\")","v":11},"Number of Treatment 1 Studies",1,null,{"$f":"E4+1","v":2},null,{"$f":"G4+1","v":3},null,{"$f":"I4+1","v":4},null,{"$f":"K4+1","v":5},null,{"$f":"M4+1","v":6},null,{"$f":"O4+1","v":7},null,{"$f":"Q4+1","v":8},null,{"$f":"S4+1","v":9},null,{"$f":"U4+1","v":10},null,{"$f":"W4+1","v":11},null,{"$f":"Y4+1","v":12},null,{"$f":"AA4+1","v":13},null,{"$f":"AC4+1","v":14},null,{"$f":"AE4+1","v":15}]
[null,null,"Study #","Treatment Name","placebo",null,"warfarin-adjusted",null,"aspirin",null,"warfarin-fixed",null,"aspirin+warfarin"]
[null,null,null,"Study Name","# of Events","# of Patients","# of Events","# of Patients","# of Events","# of Patients","# of Events","# of Patients","# of Events","# of Patients","# of Events","# of Patients","# of Events","# of Patients","# of Events","# of Patients","# of Events","# of Patients","# of Events","# of Patients","# of Events","# of Patients","# of Events","# of Patients","# of Events","# of Patients","# of Events","# of Patients","# of Events","# of Patients"]
[null,null,1,"AFASAK",19,336,9,335,16,336]
[null,null,2,"SPAF",19,211,8,210,25,552]
[null,null,3,"BAATAF",13,208,3,212]
[null,null,4,"CAFA",9,191,6,187]
[null,null,5,"SPINAF",23,290,7,281]
[null,null,6,"EAFT-1",50,214,20,225,49,230]
[null,null,7,"EAFT-2",40,164,null,null,39,174]
[null,null,8,"ESPS-2",23,107,null,null,17,104]
[null,null,9,"LASAF",6,182,null,null,5,194]
[null,null,10,"UK-TIA",8,30,null,null,8,34]
[null,null,11,"SPAF-2",null,null,19,358,21,357]
[null,null,12,"AFASAK-2",null,null,11,170,9,169,14,167,11,171]
[null,null,13,"PATAF",null,null,3,131,4,141,4,122]
[null,null,14,"SPAF-3",null,null,14,523,null,null,null,null,48,521]
[null,null,15,"MWNAF",1,153,null,null,null,null,5,150]
[null,null,16]
[null,null,17]
[null,null,18]
[null,null,19]
[null,null,20]
[null,null,21]
[null,null,22]
[null,null,23]
[null,null,24]
[null,null,25]
[null,null,26]
[null,null,27]
[null,null,28]
[null,null,29]
[null,null,30]
[null,null,31]
[null,null,32]
[null,null,33]
[null,null,34]
[null,null,35]
[null,null,36]
[null,null,37]
[null,null,38]
[null,null,39]
[null,null,40]
[null,null,41]
[null,null,42]
[null,null,43]
[null,null,44]
[null,null,45]
[null,null,46]
[null,null,47]
[null,null,48]
[null,null,49]
[null,null,50]
[null,null,{"$f":"MIN(patient_totals)","v":439},{"$f":"SUM(patient_totals)","v":8140},{"$f":"IF(SUM(F7:F56)=0,\"\",SUM(F7:F56))","v":2086},null,{"$f":"IF(SUM(H7:H56)=0,\"\",SUM(H7:H56))","v":2632},null,{"$f":"IF(SUM(J7:J56)=0,\"\",SUM(J7:J56))","v":2291},null,{"$f":"IF(SUM(L7:L56)=0,\"\",SUM(L7:L56))","v":439},null,{"$f":"IF(SUM(N7:N56)=0,\"\",SUM(N7:N56))","v":692},null,{"$f":"IF(SUM(P7:P56)=0,\"\",SUM(P7:P56))","v":""},null,{"$f":"IF(SUM(R7:R56)=0,\"\",SUM(R7:R56))","v":""},null,{"$f":"IF(SUM(T7:T56)=0,\"\",SUM(T7:T56))","v":""},null,{"$f":"IF(SUM(V7:V56)=0,\"\",SUM(V7:V56))","v":""},null,{"$f":"IF(SUM(X7:X56)=0,\"\",SUM(X7:X56))","v":""},null,{"$f":"IF(SUM(Z7:Z56)=0,\"\",SUM(Z7:Z56))","v":""},null,{"$f":"IF(SUM(AB7:AB56)=0,\"\",SUM(AB7:AB56))","v":""},null,{"$f":"IF(SUM(AD7:AD56)=0,\"\",SUM(AD7:AD56))","v":""},null,{"$f":"IF(SUM(AF7:AF56)=0,\"\",SUM(AF7:AF56))","v":""},null,{"$f":"IF(SUM(AH7:AH56)=0,\"\",SUM(AH7:AH56))","v":""}]

{"sheet":"Diagram Data","index":3,"n_rows":59,"n_cols":20,"rows_kept":59,"cut":false,"hidden":true,"merged":[]}
[]
[]
[null,"Max LogORs"]
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[null,{"$f":"IF('DATA Input'!Q$5=\"\",\"\",'DATA Input'!Q$5)","v":""},"",null,null,null,null,"WinBUGs Data Table and List Statement "]
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[null,{"$f":"IF('DATA Input'!AE$5=\"\",\"\",'DATA Input'!AE$5)","v":""},""]
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[]
[]
[null,null,null,"Network Characteristics "]
[null,null,null,"Characteristic","Number"]
[null,null,null,"Number of Interventions",{"$f":"num_treatments","v":5}]
[null,null,null,"Number of Studies",{"$f":"num_studies","v":15}]
[null,null,null,"Total Number of Patients in Network",{"$f":"max_total","v":8140}]
[null,null,null,"Total Number of Events in Network",{"$f":"SUM('DATA Input'!E7:E55,'DATA Input'!G7:G56,'DATA Input'!I7:I56,'DATA Input'!K7:K56,'DATA Input'!M7:M56,'DATA Input'!O7:O56,'DATA Input'!Q7:Q56,'DATA Input'!S7:S56,'DATA Input'!U7:U56,'DATA Input'!W7:W56,'DATA Input'!Y7:Y56,'DATA Input'!AA7:AA56,'DATA Input'!AC7:AC56,'DATA Input'!AE7:AE56,'DATA Input'!AG7:AG56)","v":586}]
[null,null,null,"Total Possible Pairwise Comparisons",{"$f":"COMBIN(E7,2)","v":10}]
[null,null,null,"Total Number Pairwise Comparisons With Direct Data",{"$f":"Unique_connections(list)","v":9}]
[null,null,null,"Number of Two-arm Studies",{"$f":"COUNTIF(OFFSET('WINBUGS data'!G17:G66,0,MATCH(\"na[]\",'WINBUGS data'!H16:BE16,0)),\"2\")","v":10}]
[null,null,null,"Number of Multi-Arms Studies",{"$f":"COUNTIF(OFFSET('WINBUGS data'!G17:G66,0,MATCH(\"na[]\",'WINBUGS data'!H16:BE16,0)),\">2\")","v":5}]
[null,null,null,"Number of Studies With  No Zero Events",{"$f":"No_zero('DATA Input'!E7:AH56)","v":15}]
[null,null,null,"Number of Studies With At Least One Zero Event",{"$f":"num_studies-E15","v":0}]
[null,null,null,"Number of Studies with All Zero Events",{"$f":"All_zero('DATA Input'!E7:AH56)","v":0}]
[]
[]
[]
[null,null,null,"Intervention Characteristics "]
[null,null,null,"Treatment  "]
[null,null,null,"Treatment  ","# Studies ","# Events","# Patients","Aggregate Rate","Min. Rate","Max. Rate"]
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[]
[]
[null,null,null,"Direct Comparison Characteristics"]
[null,null,null,"Comparison","# Studies ","# Patients","# Events"]
[null,null,null,"placebo vs. warfarin-adjusted",6,2900,186]
[null,null,null,"placebo vs. aspirin",7,2868,324]
[null,null,null,"warfarin-adjusted vs. aspirin",6,3214,194]
[null,null,null,"warfarin-adjusted vs. warfarin-fixed",2,590,32]
[null,null,null,"warfarin-adjusted vs. aspirin+warfarin",2,1385,84]
[null,null,null,"aspirin vs. warfarin-fixed",2,599,31]
[null,null,null,"aspirin vs. aspirin+warfarin",1,340,20]
[null,null,null,"warfarin-fixed vs. aspirin+warfarin",1,338,25]
[null,null,null,"placebo vs. warfarin-fixed",1,303,6]

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[null,"Base Node Size",30]
[]
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[null,"Legend"]
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[null,{"$f":"'WINBUGS data'!B6","v":"aspirin"},"C"]
[null,{"$f":"'WINBUGS data'!B7","v":"warfarin-fixed"},"D"]
[null,{"$f":"'WINBUGS data'!B8","v":"aspirin+warfarin"},"E"]
[null,{"$f":"'WINBUGS data'!B9","v":""},"F"]
[null,{"$f":"'WINBUGS data'!B10","v":""},"G"]
[null,{"$f":"'WINBUGS data'!B11","v":""},"H"]
[null,{"$f":"'WINBUGS data'!B12","v":""},"I"]
[null,{"$f":"'WINBUGS data'!B13","v":""},"J"]
[null,{"$f":"'WINBUGS data'!B14","v":""},"K"]
[null,{"$f":"'WINBUGS data'!B15","v":""},"L"]
[null,{"$f":"'WINBUGS data'!B16","v":""},"M"]
[null,{"$f":"'WINBUGS data'!B17","v":""},"N"]
[null,{"$f":"'WINBUGS data'!B18","v":""},"O"]

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[null,null,"Comparison Spacing",2]
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[null,null,"Plot Size",375]

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[null,null,null,null,null,"0.56\n(0.42 – 0.75)","aspirin",null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,"OR <1 Means the Treatment in Top Left is Better"]
[null,null,null,null,null,"0.42\n(0.32 – 0.55)","0.75\n(0.59 – 0.94)","placebo"]
[null,null,null,null,null,"0.37\n(0.23 – 0.58)","0.66\n(0.40 – 1.07)","0.89\n(0.53 – 1.47)","aspirin+warfarin"]
[null,null,null,null,null,"0.37\n(0.20 – 0.65)","0.65\n(0.36 – 1.15)","0.87\n(0.47 – 1.58)","0.98\n(0.54 – 1.79)","warfarin-fixed"]

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[null,null,"Draw Rankogram",null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,"Line Graph (All Treatments)"]
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[null,null,"Treatment","SUCRA"]

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{"sheet":"Inconsistency Results","index":12,"n_rows":150,"n_cols":12,"rows_kept":150,"cut":false,"hidden":true,"merged":[[2,4,2,6],[2,9,2,11]]}
[]
[]
[null,null,null,null,"Fixed Effects Odds Ratios",null,null,null,null,"Random Effects Odds Ratios"]
[null,null,null,null,"Treatment Comparisons","Consistency Model","InConsistency Model",null,null,"Treatment Comparisons","Consistency Model","InConsistency Model"]
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[null,null,null,{"$f":"IF('Fixed Effects'!N144=\"\",\"\",'Fixed Effects'!N144)","v":""},{"$f":"IF('Fixed Effects'!O144=\"\",\"\",'Fixed Effects'!O144)","v":""},{"$f":"IF('Fixed Effects'!Q144=\"\",\"\",'Fixed Effects'!Q144)","v":""},{"$f":"IF(D144=\"\",\"\",IF((INDEX('FE Inconsistency Results'!$H$1:$H$500,MATCH(SUBSTITUTE(D144,\"OR\",\"d\"),'FE Inconsistency Results'!$B$1:$B$500,0),1))-(INDEX('FE Inconsistency Results'!$F$1:$F$500,MATCH(SUBSTITUTE(D144,\"OR\",\"d\"),'FE Inconsistency Results'!$B$1:$B$500,0),1))>50,\"N/A\",EXP(INDEX('FE Inconsistency Results'!$G$1:$G$500,MATCH(SUBSTITUTE(D144,\"OR\",\"d\"),'FE Inconsistency Results'!$B$1:$B$500,0),1))))","v":""},null,{"$f":"IF(INDIRECT(CONCATENATE(\"'\",'Inconsistency Data'!$I$4,\"'!N144\"))=\"\",\"\",INDIRECT(CONCATENATE(\"'\",'Inconsistency Data'!$I$4,\"'!N144\")))","v":""},{"$f":"IF(INDIRECT(CONCATENATE(\"'\",'Inconsistency Data'!$I$4,\"'!O144\"))=\"\",\"\",INDIRECT(CONCATENATE(\"'\",'Inconsistency Data'!$I$4,\"'!O144\")))","v":""},{"$f":"IF(INDIRECT(CONCATENATE(\"'\",'Inconsistency Data'!$I$4,\"'!Q144\"))=\"\",\"\",INDIRECT(CONCATENATE(\"'\",'Inconsistency Data'!$I$4,\"'!Q144\")))","v":""},{"$f":"IF(D144=\"\",\"\",IF((INDEX('RE Inconsistency Results'!$H$1:$H$500,MATCH(SUBSTITUTE(D144,\"OR\",\"d\"),'RE Inconsistency Results'!$B$1:$B$500,0),1))-(INDEX('RE Inconsistency Results'!$F$1:$F$500,MATCH(SUBSTITUTE(D144,\"OR\",\"d\"),'RE Inconsistency Results'!$B$1:$B$500,0),1))>50,\"N/A\",EXP(INDEX('RE Inconsistency Results'!$G$1:$G$500,MATCH(SUBSTITUTE(D144,\"OR\",\"d\"),'RE Inconsistency Results'!$B$1:$B$500,0),1))))","v":""}]
[null,null,null,{"$f":"IF('Fixed Effects'!N145=\"\",\"\",'Fixed Effects'!N145)","v":""},{"$f":"IF('Fixed Effects'!O145=\"\",\"\",'Fixed Effects'!O145)","v":""},{"$f":"IF('Fixed Effects'!Q145=\"\",\"\",'Fixed Effects'!Q145)","v":""},{"$f":"IF(D145=\"\",\"\",IF((INDEX('FE Inconsistency Results'!$H$1:$H$500,MATCH(SUBSTITUTE(D145,\"OR\",\"d\"),'FE Inconsistency Results'!$B$1:$B$500,0),1))-(INDEX('FE Inconsistency Results'!$F$1:$F$500,MATCH(SUBSTITUTE(D145,\"OR\",\"d\"),'FE Inconsistency Results'!$B$1:$B$500,0),1))>50,\"N/A\",EXP(INDEX('FE Inconsistency Results'!$G$1:$G$500,MATCH(SUBSTITUTE(D145,\"OR\",\"d\"),'FE Inconsistency Results'!$B$1:$B$500,0),1))))","v":""},null,{"$f":"IF(INDIRECT(CONCATENATE(\"'\",'Inconsistency Data'!$I$4,\"'!N145\"))=\"\",\"\",INDIRECT(CONCATENATE(\"'\",'Inconsistency Data'!$I$4,\"'!N145\")))","v":""},{"$f":"IF(INDIRECT(CONCATENATE(\"'\",'Inconsistency Data'!$I$4,\"'!O145\"))=\"\",\"\",INDIRECT(CONCATENATE(\"'\",'Inconsistency Data'!$I$4,\"'!O145\")))","v":""},{"$f":"IF(INDIRECT(CONCATENATE(\"'\",'Inconsistency Data'!$I$4,\"'!Q145\"))=\"\",\"\",INDIRECT(CONCATENATE(\"'\",'Inconsistency Data'!$I$4,\"'!Q145\")))","v":""},{"$f":"IF(D145=\"\",\"\",IF((INDEX('RE Inconsistency Results'!$H$1:$H$500,MATCH(SUBSTITUTE(D145,\"OR\",\"d\"),'RE Inconsistency Results'!$B$1:$B$500,0),1))-(INDEX('RE Inconsistency Results'!$F$1:$F$500,MATCH(SUBSTITUTE(D145,\"OR\",\"d\"),'RE Inconsistency Results'!$B$1:$B$500,0),1))>50,\"N/A\",EXP(INDEX('RE Inconsistency Results'!$G$1:$G$500,MATCH(SUBSTITUTE(D145,\"OR\",\"d\"),'RE Inconsistency Results'!$B$1:$B$500,0),1))))","v":""}]
[null,null,null,{"$f":"IF('Fixed Effects'!N146=\"\",\"\",'Fixed Effects'!N146)","v":""},{"$f":"IF('Fixed Effects'!O146=\"\",\"\",'Fixed Effects'!O146)","v":""},{"$f":"IF('Fixed Effects'!Q146=\"\",\"\",'Fixed Effects'!Q146)","v":""},{"$f":"IF(D146=\"\",\"\",IF((INDEX('FE Inconsistency Results'!$H$1:$H$500,MATCH(SUBSTITUTE(D146,\"OR\",\"d\"),'FE Inconsistency Results'!$B$1:$B$500,0),1))-(INDEX('FE Inconsistency Results'!$F$1:$F$500,MATCH(SUBSTITUTE(D146,\"OR\",\"d\"),'FE Inconsistency Results'!$B$1:$B$500,0),1))>50,\"N/A\",EXP(INDEX('FE Inconsistency Results'!$G$1:$G$500,MATCH(SUBSTITUTE(D146,\"OR\",\"d\"),'FE Inconsistency Results'!$B$1:$B$500,0),1))))","v":""},null,{"$f":"IF(INDIRECT(CONCATENATE(\"'\",'Inconsistency Data'!$I$4,\"'!N146\"))=\"\",\"\",INDIRECT(CONCATENATE(\"'\",'Inconsistency Data'!$I$4,\"'!N146\")))","v":""},{"$f":"IF(INDIRECT(CONCATENATE(\"'\",'Inconsistency Data'!$I$4,\"'!O146\"))=\"\",\"\",INDIRECT(CONCATENATE(\"'\",'Inconsistency Data'!$I$4,\"'!O146\")))","v":""},{"$f":"IF(INDIRECT(CONCATENATE(\"'\",'Inconsistency Data'!$I$4,\"'!Q146\"))=\"\",\"\",INDIRECT(CONCATENATE(\"'\",'Inconsistency Data'!$I$4,\"'!Q146\")))","v":""},{"$f":"IF(D146=\"\",\"\",IF((INDEX('RE Inconsistency Results'!$H$1:$H$500,MATCH(SUBSTITUTE(D146,\"OR\",\"d\"),'RE Inconsistency Results'!$B$1:$B$500,0),1))-(INDEX('RE Inconsistency Results'!$F$1:$F$500,MATCH(SUBSTITUTE(D146,\"OR\",\"d\"),'RE Inconsistency Results'!$B$1:$B$500,0),1))>50,\"N/A\",EXP(INDEX('RE Inconsistency Results'!$G$1:$G$500,MATCH(SUBSTITUTE(D146,\"OR\",\"d\"),'RE Inconsistency Results'!$B$1:$B$500,0),1))))","v":""}]
[null,null,null,{"$f":"IF('Fixed Effects'!N147=\"\",\"\",'Fixed Effects'!N147)","v":""},{"$f":"IF('Fixed Effects'!O147=\"\",\"\",'Fixed Effects'!O147)","v":""},{"$f":"IF('Fixed Effects'!Q147=\"\",\"\",'Fixed Effects'!Q147)","v":""},{"$f":"IF(D147=\"\",\"\",IF((INDEX('FE Inconsistency Results'!$H$1:$H$500,MATCH(SUBSTITUTE(D147,\"OR\",\"d\"),'FE Inconsistency Results'!$B$1:$B$500,0),1))-(INDEX('FE Inconsistency Results'!$F$1:$F$500,MATCH(SUBSTITUTE(D147,\"OR\",\"d\"),'FE Inconsistency Results'!$B$1:$B$500,0),1))>50,\"N/A\",EXP(INDEX('FE Inconsistency Results'!$G$1:$G$500,MATCH(SUBSTITUTE(D147,\"OR\",\"d\"),'FE Inconsistency Results'!$B$1:$B$500,0),1))))","v":""},null,{"$f":"IF(INDIRECT(CONCATENATE(\"'\",'Inconsistency Data'!$I$4,\"'!N147\"))=\"\",\"\",INDIRECT(CONCATENATE(\"'\",'Inconsistency Data'!$I$4,\"'!N147\")))","v":""},{"$f":"IF(INDIRECT(CONCATENATE(\"'\",'Inconsistency Data'!$I$4,\"'!O147\"))=\"\",\"\",INDIRECT(CONCATENATE(\"'\",'Inconsistency Data'!$I$4,\"'!O147\")))","v":""},{"$f":"IF(INDIRECT(CONCATENATE(\"'\",'Inconsistency Data'!$I$4,\"'!Q147\"))=\"\",\"\",INDIRECT(CONCATENATE(\"'\",'Inconsistency Data'!$I$4,\"'!Q147\")))","v":""},{"$f":"IF(D147=\"\",\"\",IF((INDEX('RE Inconsistency Results'!$H$1:$H$500,MATCH(SUBSTITUTE(D147,\"OR\",\"d\"),'RE Inconsistency Results'!$B$1:$B$500,0),1))-(INDEX('RE Inconsistency Results'!$F$1:$F$500,MATCH(SUBSTITUTE(D147,\"OR\",\"d\"),'RE Inconsistency Results'!$B$1:$B$500,0),1))>50,\"N/A\",EXP(INDEX('RE Inconsistency Results'!$G$1:$G$500,MATCH(SUBSTITUTE(D147,\"OR\",\"d\"),'RE Inconsistency Results'!$B$1:$B$500,0),1))))","v":""}]
[null,null,null,{"$f":"IF('Fixed Effects'!N148=\"\",\"\",'Fixed Effects'!N148)","v":""},{"$f":"IF('Fixed Effects'!O148=\"\",\"\",'Fixed Effects'!O148)","v":""},{"$f":"IF('Fixed Effects'!Q148=\"\",\"\",'Fixed Effects'!Q148)","v":""},{"$f":"IF(D148=\"\",\"\",IF((INDEX('FE Inconsistency Results'!$H$1:$H$500,MATCH(SUBSTITUTE(D148,\"OR\",\"d\"),'FE Inconsistency Results'!$B$1:$B$500,0),1))-(INDEX('FE Inconsistency Results'!$F$1:$F$500,MATCH(SUBSTITUTE(D148,\"OR\",\"d\"),'FE Inconsistency Results'!$B$1:$B$500,0),1))>50,\"N/A\",EXP(INDEX('FE Inconsistency Results'!$G$1:$G$500,MATCH(SUBSTITUTE(D148,\"OR\",\"d\"),'FE Inconsistency Results'!$B$1:$B$500,0),1))))","v":""},null,{"$f":"IF(INDIRECT(CONCATENATE(\"'\",'Inconsistency Data'!$I$4,\"'!N148\"))=\"\",\"\",INDIRECT(CONCATENATE(\"'\",'Inconsistency Data'!$I$4,\"'!N148\")))","v":""},{"$f":"IF(INDIRECT(CONCATENATE(\"'\",'Inconsistency Data'!$I$4,\"'!O148\"))=\"\",\"\",INDIRECT(CONCATENATE(\"'\",'Inconsistency Data'!$I$4,\"'!O148\")))","v":""},{"$f":"IF(INDIRECT(CONCATENATE(\"'\",'Inconsistency Data'!$I$4,\"'!Q148\"))=\"\",\"\",INDIRECT(CONCATENATE(\"'\",'Inconsistency Data'!$I$4,\"'!Q148\")))","v":""},{"$f":"IF(D148=\"\",\"\",IF((INDEX('RE Inconsistency Results'!$H$1:$H$500,MATCH(SUBSTITUTE(D148,\"OR\",\"d\"),'RE Inconsistency Results'!$B$1:$B$500,0),1))-(INDEX('RE Inconsistency Results'!$F$1:$F$500,MATCH(SUBSTITUTE(D148,\"OR\",\"d\"),'RE Inconsistency Results'!$B$1:$B$500,0),1))>50,\"N/A\",EXP(INDEX('RE Inconsistency Results'!$G$1:$G$500,MATCH(SUBSTITUTE(D148,\"OR\",\"d\"),'RE Inconsistency Results'!$B$1:$B$500,0),1))))","v":""}]
[null,null,null,{"$f":"IF('Fixed Effects'!N149=\"\",\"\",'Fixed Effects'!N149)","v":""},{"$f":"IF('Fixed Effects'!O149=\"\",\"\",'Fixed Effects'!O149)","v":""},{"$f":"IF('Fixed Effects'!Q149=\"\",\"\",'Fixed Effects'!Q149)","v":""},{"$f":"IF(D149=\"\",\"\",IF((INDEX('FE Inconsistency Results'!$H$1:$H$500,MATCH(SUBSTITUTE(D149,\"OR\",\"d\"),'FE Inconsistency Results'!$B$1:$B$500,0),1))-(INDEX('FE Inconsistency Results'!$F$1:$F$500,MATCH(SUBSTITUTE(D149,\"OR\",\"d\"),'FE Inconsistency Results'!$B$1:$B$500,0),1))>50,\"N/A\",EXP(INDEX('FE Inconsistency Results'!$G$1:$G$500,MATCH(SUBSTITUTE(D149,\"OR\",\"d\"),'FE Inconsistency Results'!$B$1:$B$500,0),1))))","v":""},null,{"$f":"IF(INDIRECT(CONCATENATE(\"'\",'Inconsistency Data'!$I$4,\"'!N149\"))=\"\",\"\",INDIRECT(CONCATENATE(\"'\",'Inconsistency Data'!$I$4,\"'!N149\")))","v":""},{"$f":"IF(INDIRECT(CONCATENATE(\"'\",'Inconsistency Data'!$I$4,\"'!O149\"))=\"\",\"\",INDIRECT(CONCATENATE(\"'\",'Inconsistency Data'!$I$4,\"'!O149\")))","v":""},{"$f":"IF(INDIRECT(CONCATENATE(\"'\",'Inconsistency Data'!$I$4,\"'!Q149\"))=\"\",\"\",INDIRECT(CONCATENATE(\"'\",'Inconsistency Data'!$I$4,\"'!Q149\")))","v":""},{"$f":"IF(D149=\"\",\"\",IF((INDEX('RE Inconsistency Results'!$H$1:$H$500,MATCH(SUBSTITUTE(D149,\"OR\",\"d\"),'RE Inconsistency Results'!$B$1:$B$500,0),1))-(INDEX('RE Inconsistency Results'!$F$1:$F$500,MATCH(SUBSTITUTE(D149,\"OR\",\"d\"),'RE Inconsistency Results'!$B$1:$B$500,0),1))>50,\"N/A\",EXP(INDEX('RE Inconsistency Results'!$G$1:$G$500,MATCH(SUBSTITUTE(D149,\"OR\",\"d\"),'RE Inconsistency Results'!$B$1:$B$500,0),1))))","v":""}]
[null,null,null,{"$f":"IF('Fixed Effects'!N150=\"\",\"\",'Fixed Effects'!N150)","v":""},{"$f":"IF('Fixed Effects'!O150=\"\",\"\",'Fixed Effects'!O150)","v":""},{"$f":"IF('Fixed Effects'!Q150=\"\",\"\",'Fixed Effects'!Q150)","v":""},{"$f":"IF(D150=\"\",\"\",IF((INDEX('FE Inconsistency Results'!$H$1:$H$500,MATCH(SUBSTITUTE(D150,\"OR\",\"d\"),'FE Inconsistency Results'!$B$1:$B$500,0),1))-(INDEX('FE Inconsistency Results'!$F$1:$F$500,MATCH(SUBSTITUTE(D150,\"OR\",\"d\"),'FE Inconsistency Results'!$B$1:$B$500,0),1))>50,\"N/A\",EXP(INDEX('FE Inconsistency Results'!$G$1:$G$500,MATCH(SUBSTITUTE(D150,\"OR\",\"d\"),'FE Inconsistency Results'!$B$1:$B$500,0),1))))","v":""},null,{"$f":"IF(INDIRECT(CONCATENATE(\"'\",'Inconsistency Data'!$I$4,\"'!N150\"))=\"\",\"\",INDIRECT(CONCATENATE(\"'\",'Inconsistency Data'!$I$4,\"'!N150\")))","v":""},{"$f":"IF(INDIRECT(CONCATENATE(\"'\",'Inconsistency Data'!$I$4,\"'!O150\"))=\"\",\"\",INDIRECT(CONCATENATE(\"'\",'Inconsistency Data'!$I$4,\"'!O150\")))","v":""},{"$f":"IF(INDIRECT(CONCATENATE(\"'\",'Inconsistency Data'!$I$4,\"'!Q150\"))=\"\",\"\",INDIRECT(CONCATENATE(\"'\",'Inconsistency Data'!$I$4,\"'!Q150\")))","v":""},{"$f":"IF(D150=\"\",\"\",IF((INDEX('RE Inconsistency Results'!$H$1:$H$500,MATCH(SUBSTITUTE(D150,\"OR\",\"d\"),'RE Inconsistency Results'!$B$1:$B$500,0),1))-(INDEX('RE Inconsistency Results'!$F$1:$F$500,MATCH(SUBSTITUTE(D150,\"OR\",\"d\"),'RE Inconsistency Results'!$B$1:$B$500,0),1))>50,\"N/A\",EXP(INDEX('RE Inconsistency Results'!$G$1:$G$500,MATCH(SUBSTITUTE(D150,\"OR\",\"d\"),'RE Inconsistency Results'!$B$1:$B$500,0),1))))","v":""}]

{"sheet":"FE Results","index":13,"n_rows":0,"n_cols":0,"rows_kept":0,"cut":false,"hidden":true,"merged":[]}

{"sheet":"RE Results (Vague Prior)","index":14,"n_rows":0,"n_cols":0,"rows_kept":0,"cut":false,"hidden":true,"merged":[]}

{"sheet":"RE Results (Informative Prior)","index":15,"n_rows":0,"n_cols":0,"rows_kept":0,"cut":false,"hidden":true,"merged":[]}

{"sheet":"FE Inconsistency Results","index":16,"n_rows":0,"n_cols":0,"rows_kept":0,"cut":false,"hidden":true,"merged":[]}

{"sheet":"RE Inconsistency Results","index":17,"n_rows":0,"n_cols":0,"rows_kept":0,"cut":false,"hidden":true,"merged":[]}

{"sheet":"Informative Priors","index":18,"n_rows":21,"n_cols":22,"rows_kept":21,"cut":false,"hidden":false,"merged":[[4,4,4,7],[10,4,10,7],[16,4,16,7]]}
[]
[]
[null,null,null,null,"Source:  Turner 2012"]
[]
[null,null,null,null,"Mean"]
[null,null,null,null,"Intervention Type /Outcomes","Pharmacological vs Control/Placebo","Pharmacological vs Pharmacological","Non-Pharmacological (Any)",null,null,null,null,null,null,null,null,null,null,null,null,null,"Pharmacological vs Control/Placebo"]
[null,null,null,null,"All Cause Mortality",-4.0599999999999996,-4.2699999999999996,-3.93,null,null,null,null,null,null,null,null,null,null,null,null,null,"Pharmacological vs Pharmacological"]
[null,null,null,null,"Semi-Objective",-3.02,-3.23,-2.89,null,null,null,null," ",null,null,null,null,null,null,null,null,"Non-Pharmacological (Any)"]
[null,null,null,null,"Subjective",-2.13,-2.34,-2.0099999999999998]
[]
[null,null,null,null,"Sigma"]
[null,null,null,null,"Intervention Type /Outcomes",{"$f":"F6","v":"Pharmacological vs Control/Placebo"},{"$f":"G6","v":"Pharmacological vs Pharmacological"},{"$f":"H6","v":"Non-Pharmacological (Any)"}]
[null,null,null,null,{"$f":"E7","v":"All Cause Mortality"},1.45,1.48,1.51]
[null,null,null,null,{"$f":"E8","v":"Semi-Objective"},1.85,1.88,1.91]
[null,null,null,null,{"$f":"E9","v":"Subjective"},1.58,1.62,1.64]
[]
[null,null,null,null,"Sigma^2"]
[null,null,null,null,"Intervention Type /Outcomes",{"$f":"F12","v":"Pharmacological vs Control/Placebo"},{"$f":"G12","v":"Pharmacological vs Pharmacological"},{"$f":"H12","v":"Non-Pharmacological (Any)"}]
[null,null,null,null,{"$f":"E13","v":"All Cause Mortality"},{"$f":"F13^2","v":2.1025},2.1903999999999999,2.2801]
[null,null,null,null,{"$f":"E14","v":"Semi-Objective"},3.4225000000000003,3.5343999999999998,3.6480999999999999]
[null,null,null,null,{"$f":"E15","v":"Subjective"},2.4964000000000004,2.6244000000000005,2.6895999999999995]

{"sheet":"Data Table","index":19,"n_rows":17,"n_cols":16,"rows_kept":17,"cut":false,"hidden":false,"merged":[]}
["r[,1]","n[,1]","r[,2]","n[,2]","r[,3]","n[,3]","r[,4]","n[,4]","r[,5]","n[,5]","t[,1]","t[,2]","t[,3]","t[,4]","t[,5]","na[]"]
[19,336,9,335,16,336,"NA",1,"NA",1,1,2,3,"NA","NA",3]
[19,211,8,210,25,552,"NA",1,"NA",1,1,2,3,"NA","NA",3]
[13,208,3,212,"NA",1,"NA",1,"NA",1,1,2,"NA","NA","NA",2]
[9,191,6,187,"NA",1,"NA",1,"NA",1,1,2,"NA","NA","NA",2]
[23,290,7,281,"NA",1,"NA",1,"NA",1,1,2,"NA","NA","NA",2]
[50,214,20,225,49,230,"NA",1,"NA",1,1,2,3,"NA","NA",3]
[40,164,39,174,"NA",1,"NA",1,"NA",1,1,3,"NA","NA","NA",2]
[23,107,17,104,"NA",1,"NA",1,"NA",1,1,3,"NA","NA","NA",2]
[6,182,5,194,"NA",1,"NA",1,"NA",1,1,3,"NA","NA","NA",2]
[8,30,8,34,"NA",1,"NA",1,"NA",1,1,3,"NA","NA","NA",2]
[19,358,21,357,"NA",1,"NA",1,"NA",1,2,3,"NA","NA","NA",2]
[11,170,9,169,14,167,11,171,"NA",1,2,3,4,5,"NA",4]
[3,131,4,141,4,122,"NA",1,"NA",1,2,3,4,"NA","NA",3]
[14,523,48,521,"NA",1,"NA",1,"NA",1,2,5,"NA","NA","NA",2]
[1,153,5,150,"NA",1,"NA",1,"NA",1,1,4,"NA","NA","NA",2]
["END"]

{"sheet":"FE Script","index":20,"n_rows":47,"n_cols":1,"rows_kept":47,"cut":false,"hidden":false,"merged":[]}
["#open log file"]
["display('log')"]
["# check model"]
[{"$f":"CONCATENATE(\"check('\",SUBSTITUTE(data_directory,\"\\\",\"/\"),FEmodel_name,\".txt')\")","v":"check('C:/WinBUGS data/Fixed Effect Model.txt')"}]
["#load datalist"]
[{"$f":"CONCATENATE(\"data('\",SUBSTITUTE(data_directory,\"\\\",\"/\"),datalist_name,\".txt')\")","v":"data('C:/WinBUGS data/Data List.txt')"}]
["#load data table"]
[{"$f":"CONCATENATE(\"data('\",SUBSTITUTE(data_directory,\"\\\",\"/\"),data_name,\".txt')\")","v":"data('C:/WinBUGS data/Data Table.txt')"}]
["#compile with 3 chains"]
["compile(3)"]
["#load datalist"]
[{"$f":"CONCATENATE(\"inits(1,'\",SUBSTITUTE(data_directory,\"\\\",\"/\"),FEinits_name,\"1.txt')\")","v":"inits(1,'C:/WinBUGS data/Fixed Effect Inits1.txt')"}]
["#load datalist"]
[{"$f":"CONCATENATE(\"inits(2,'\",SUBSTITUTE(data_directory,\"\\\",\"/\"),FEinits_name,\"2.txt')\")","v":"inits(2,'C:/WinBUGS data/Fixed Effect Inits2.txt')"}]
["#load datalist"]
[{"$f":"CONCATENATE(\"inits(3,'\",SUBSTITUTE(data_directory,\"\\\",\"/\"),FEinits_name,\"3.txt')\")","v":"inits(3,'C:/WinBUGS data/Fixed Effect Inits3.txt')"}]
["#generate inits"]
["gen.inits()"]
["#run burn in"]
[{"$f":"IF(auto_run,CONCATENATE(\"update(\",burn_in,\")\"),\"\")","v":"update(1000)"}]
["#monitor "]
[{"$f":"IF(auto_run,IF(DIC,\"dic.set()\",\"\"),\"\")","v":"dic.set()"}]
[{"$f":"IF(auto_run,IF(rank,\"set(rk)\",\"\"),\"\")","v":"set(rk)"}]
[{"$f":"IF(auto_run,IF(best,\"set(best)\",\"\"),\"\")","v":"set(best)"}]
[{"$f":"IF(auto_run,IF(monitor_or,\"set(OR)\",\"\"),\"\")","v":"set(OR)"}]
[{"$f":"IF(auto_run,IF(prob,\"set(prob)\",\"\"),\"\")","v":"set(prob)"}]
[{"$f":"IF(auto_run,IF(monitor_resdev,\"set(resdev)\",\"\"),\"\")","v":"set(resdev)"}]
["set(totresdev)"]
[{"$f":"IF(auto_run,IF(monitor_rd,\"set(RD)\",\"\"),\"\")","v":""}]
[{"$f":"IF(auto_run,IF(monitor_nnt,\"set(NNT)\",\"\"),\"\")","v":""}]
[{"$f":"IF(auto_run,IF(monitor_SUCRA,\"set(SUCRA)\",\"\"),\"\")","v":"set(SUCRA)"}]
[]
[]
["set(dev)"]
["#run model"]
[{"$f":"IF(auto_run,CONCATENATE(\"update(\",model_runs,\")\"),\"\")","v":"update(1000)"}]
["# View Results"]
[{"$f":"IF(auto_run,\"stats(*)\",\"\")","v":"stats(*)"}]
[{"$f":"IF(auto_run,IF(DIC,\"dic.stats()\",\"\"),\"\")","v":"dic.stats()"}]
[{"$f":"IF(auto_run,IF(gr_or,\"gr(OR)\",\"\"),\"\")","v":"gr(OR)"}]
[{"$f":"IF(auto_run,IF(trace_or,\"trace(OR)\",\"\"),\"\")","v":"trace(OR)"}]
[{"$f":"IF(auto_run,IF(gr_rr,\"gr(RR)\",\"\"),\"\")","v":""}]
[{"$f":"IF(auto_run,IF(trace_rr,\"trace(RR)\",\"\"),\"\")","v":""}]
["# save results"]
[{"$f":"IF(auto_run,CONCATENATE(\"save('\",SUBSTITUTE(results_directory,\"\\\",\"/\"),FEresults_name,TEXT(date_time,\" m d yyyy h mm ss AM/PM\"),\".txt')\"),\"\")","v":"save('C:/WinBUGS Results/Fixed Effect Results 10 21 2014 1 03 34 PM.txt')"}]
[{"$f":"IF(auto_run,CONCATENATE(\"save('\",SUBSTITUTE(results_directory,\"\\\",\"/\"),FEresults_name,TEXT(date_time,\" m d yyyy h mm ss AM/PM\"),\".odc')\"),\"\")","v":"save('C:/WinBUGS Results/Fixed Effect Results 10 21 2014 1 03 34 PM.odc')"}]
[{"$f":"IF(auto_run,\"quit()\",\"\")","v":"quit()"}]

{"sheet":"RE Script","index":21,"n_rows":47,"n_cols":1,"rows_kept":47,"cut":false,"hidden":false,"merged":[]}
["#open log file"]
["display('log')"]
["# check model"]
[{"$f":"CONCATENATE(\"check('\",SUBSTITUTE(data_directory,\"\\\",\"/\"),REmodel_name,\".txt')\")","v":"check('C:/WinBUGS data/Random Effect Model (Vague).txt')"}]
["#load datalist"]
[{"$f":"CONCATENATE(\"data('\",SUBSTITUTE(data_directory,\"\\\",\"/\"),datalist_name,\".txt')\")","v":"data('C:/WinBUGS data/Data List.txt')"}]
["#load data table"]
[{"$f":"CONCATENATE(\"data('\",SUBSTITUTE(data_directory,\"\\\",\"/\"),data_name,\".txt')\")","v":"data('C:/WinBUGS data/Data Table.txt')"}]
["#compile with 3 chains"]
["compile(3)"]
["#load datalist"]
[{"$f":"CONCATENATE(\"inits(1,'\",SUBSTITUTE(data_directory,\"\\\",\"/\"),REinits_name,\"1.txt')\")","v":"inits(1,'C:/WinBUGS data/Random Effect Inits (Vague)1.txt')"}]
["#load datalist"]
[{"$f":"CONCATENATE(\"inits(2,'\",SUBSTITUTE(data_directory,\"\\\",\"/\"),REinits_name,\"2.txt')\")","v":"inits(2,'C:/WinBUGS data/Random Effect Inits (Vague)2.txt')"}]
["#load datalist"]
[{"$f":"CONCATENATE(\"inits(3,'\",SUBSTITUTE(data_directory,\"\\\",\"/\"),REinits_name,\"3.txt')\")","v":"inits(3,'C:/WinBUGS data/Random Effect Inits (Vague)3.txt')"}]
["#generate inits"]
["gen.inits()"]
["#run burn in"]
[{"$f":"IF(auto_run,CONCATENATE(\"update(\",burn_in,\")\"),\"\")","v":"update(1000)"}]
["#monitor "]
[{"$f":"IF(auto_run,IF(DIC,\"dic.set()\",\"\"),\"\")","v":"dic.set()"}]
[{"$f":"IF(auto_run,IF(rank,\"set(rk)\",\"\"),\"\")","v":"set(rk)"}]
[{"$f":"IF(auto_run,IF(best,\"set(best)\",\"\"),\"\")","v":"set(best)"}]
[{"$f":"IF(auto_run,IF(monitor_or,\"set(OR)\",\"\"),\"\")","v":"set(OR)"}]
[{"$f":"IF(auto_run,IF(prob,\"set(prob)\",\"\"),\"\")","v":"set(prob)"}]
[{"$f":"IF(auto_run,IF(monitor_resdev,\"set(resdev)\",\"\"),\"\")","v":"set(resdev)"}]
[{"$f":"IF(auto_run,IF(monitor_rr,\"set(RR)\",\"\"),\"\")","v":""}]
[{"$f":"IF(auto_run,IF(monitor_rd,\"set(RD)\",\"\"),\"\")","v":""}]
[{"$f":"IF(auto_run,IF(monitor_nnt,\"set(NNT)\",\"\"),\"\")","v":""}]
[{"$f":"IF(auto_run,IF(monitor_SUCRA,\"set(SUCRA)\",\"\"),\"\")","v":"set(SUCRA)"}]
["set(dev)"]
["set(totresdev)"]
["set(sd)"]
["#run model"]
[{"$f":"IF(auto_run,CONCATENATE(\"update(\",model_runs,\")\"),\"\")","v":"update(1000)"}]
["# View Results"]
[{"$f":"IF(auto_run,\"stats(*)\",\"\")","v":"stats(*)"}]
[{"$f":"IF(auto_run,IF(DIC,\"dic.stats()\",\"\"),\"\")","v":"dic.stats()"}]
[{"$f":"IF(auto_run,IF(gr_or,\"gr(OR)\",\"\"),\"\")","v":"gr(OR)"}]
[{"$f":"IF(auto_run,IF(trace_or,\"trace(OR)\",\"\"),\"\")","v":"trace(OR)"}]
[{"$f":"IF(auto_run,IF(gr_rr,\"gr(RR)\",\"\"),\"\")","v":""}]
[{"$f":"IF(auto_run,IF(trace_rr,\"trace(RR)\",\"\"),\"\")","v":""}]
["# save results"]
[{"$f":"IF(auto_run,CONCATENATE(\"save('\",SUBSTITUTE(results_directory,\"\\\",\"/\"),REresults_name,TEXT(date_time,\" m d yyyy h mm ss AM/PM\"),\".txt')\"),\"\")","v":"save('C:/WinBUGS Results/Random Effect Results (Vague ) 10 21 2014 1 03 34 PM.txt')"}]
[{"$f":"IF(auto_run,CONCATENATE(\"save('\",SUBSTITUTE(results_directory,\"\\\",\"/\"),REresults_name,TEXT(date_time,\" m d yyyy h mm ss AM/PM\"),\".odc')\"),\"\")","v":"save('C:/WinBUGS Results/Random Effect Results (Vague ) 10 21 2014 1 03 34 PM.odc')"}]
[{"$f":"IF(auto_run,\"quit()\",\"\")","v":"quit()"}]

{"sheet":"FE Inconsistency Script ","index":22,"n_rows":33,"n_cols":1,"rows_kept":33,"cut":false,"hidden":false,"merged":[]}
["#open log file"]
["display('log')"]
["# check model"]
[{"$f":"CONCATENATE(\"check('\",SUBSTITUTE(data_directory,\"\\\",\"/\"),\"Inconsistency \",FEmodel_name,\".txt')\")","v":"check('C:/WinBUGS data/Inconsistency Fixed Effect Model.txt')"}]
["#load datalist"]
[{"$f":"CONCATENATE(\"data('\",SUBSTITUTE(data_directory,\"\\\",\"/\"),\"Inconsistency \",datalist_name,\".txt')\")","v":"data('C:/WinBUGS data/Inconsistency Data List.txt')"}]
["#load data table"]
[{"$f":"CONCATENATE(\"data('\",SUBSTITUTE(data_directory,\"\\\",\"/\"),\"Inconsistency \",data_name,\".txt')\")","v":"data('C:/WinBUGS data/Inconsistency Data Table.txt')"}]
["#compile with 3 chains"]
["compile(3)"]
["#load datalist"]
[{"$f":"CONCATENATE(\"inits(1,'\",SUBSTITUTE(data_directory,\"\\\",\"/\"),\"Inconsistency \",FEinits_name,\"1.txt')\")","v":"inits(1,'C:/WinBUGS data/Inconsistency Fixed Effect Inits1.txt')"}]
["#load datalist"]
[{"$f":"CONCATENATE(\"inits(2,'\",SUBSTITUTE(data_directory,\"\\\",\"/\"),\"Inconsistency \",FEinits_name,\"2.txt')\")","v":"inits(2,'C:/WinBUGS data/Inconsistency Fixed Effect Inits2.txt')"}]
["#load datalist"]
[{"$f":"CONCATENATE(\"inits(3,'\",SUBSTITUTE(data_directory,\"\\\",\"/\"),\"Inconsistency \",FEinits_name,\"3.txt')\")","v":"inits(3,'C:/WinBUGS data/Inconsistency Fixed Effect Inits3.txt')"}]
["#generate inits"]
["gen.inits()"]
["#run burn in"]
[{"$f":"IF(auto_run,CONCATENATE(\"update(\",burn_in,\")\"),\"\")","v":"update(1000)"}]
["#monitor "]
["set(dev)"]
["set(d)"]
["set(totresdev)"]
[{"$f":"IF(auto_run,IF(DIC,\"dic.set()\",\"\"),\"\")","v":"dic.set()"}]
["#run model"]
[{"$f":"IF(auto_run,CONCATENATE(\"update(\",model_runs,\")\"),\"\")","v":"update(1000)"}]
["# View Results"]
[{"$f":"IF(auto_run,\"stats(*)\",\"\")","v":"stats(*)"}]
["# save results"]
[{"$f":"IF(auto_run,CONCATENATE(\"save('\",SUBSTITUTE(results_directory,\"\\\",\"/\"),\"Inconsistency \",FEresults_name,TEXT(date_time,\" m d yyyy h mm ss AM/PM\"),\".txt')\"),\"\")","v":"save('C:/WinBUGS Results/Inconsistency Fixed Effect Results 10 21 2014 1 03 34 PM.txt')"}]
[{"$f":"IF(auto_run,CONCATENATE(\"save('\",SUBSTITUTE(results_directory,\"\\\",\"/\"),\"Inconsistency \",FEresults_name,TEXT(date_time,\" m d yyyy h mm ss AM/PM\"),\".odc')\"),\"\")","v":"save('C:/WinBUGS Results/Inconsistency Fixed Effect Results 10 21 2014 1 03 34 PM.odc')"}]
["quit()"]

{"sheet":"RE Inconsistency Script","index":23,"n_rows":32,"n_cols":1,"rows_kept":32,"cut":false,"hidden":false,"merged":[]}
["#open log file"]
["display('log')"]
["# check model"]
[{"$f":"CONCATENATE(\"check('\",SUBSTITUTE(data_directory,\"\\\",\"/\"),\"Inconsistency \",REmodel_name,\".txt')\")","v":"check('C:/WinBUGS data/Inconsistency Random Effect Model (Vague).txt')"}]
["#load datalist"]
[{"$f":"CONCATENATE(\"data('\",SUBSTITUTE(data_directory,\"\\\",\"/\"),\"Inconsistency \",datalist_name,\".txt')\")","v":"data('C:/WinBUGS data/Inconsistency Data List.txt')"}]
["#load datalist"]
[{"$f":"CONCATENATE(\"data('\",SUBSTITUTE(data_directory,\"\\\",\"/\"),\"Inconsistency \",data_name,\".txt')\")","v":"data('C:/WinBUGS data/Inconsistency Data Table.txt')"}]
["#compile with 3 chains"]
["compile(3)"]
["#load datalist"]
[{"$f":"CONCATENATE(\"inits(1,'\",SUBSTITUTE(data_directory,\"\\\",\"/\"),\"Inconsistency \",REinits_name,\"1.txt')\")","v":"inits(1,'C:/WinBUGS data/Inconsistency Random Effect Inits (Vague)1.txt')"}]
["#load datalist"]
[{"$f":"CONCATENATE(\"inits(2,'\",SUBSTITUTE(data_directory,\"\\\",\"/\"),\"Inconsistency \",REinits_name,\"2.txt')\")","v":"inits(2,'C:/WinBUGS data/Inconsistency Random Effect Inits (Vague)2.txt')"}]
["#load datalist"]
[{"$f":"CONCATENATE(\"inits(3,'\",SUBSTITUTE(data_directory,\"\\\",\"/\"),\"Inconsistency \",REinits_name,\"3.txt')\")","v":"inits(3,'C:/WinBUGS data/Inconsistency Random Effect Inits (Vague)3.txt')"}]
["#generate inits"]
["gen.inits()"]
["#run burn in"]
[{"$f":"IF(auto_run,CONCATENATE(\"update(\",burn_in,\")\"),\"\")","v":"update(1000)"}]
["#monitor "]
["set(dev)"]
["set(d)"]
["set(totresdev)"]
["#run model"]
[{"$f":"IF(auto_run,CONCATENATE(\"update(\",model_runs,\")\"),\"\")","v":"update(1000)"}]
["# View Results"]
[{"$f":"IF(auto_run,\"stats(*)\",\"\")","v":"stats(*)"}]
["# save results"]
[{"$f":"IF(auto_run,CONCATENATE(\"save('\",SUBSTITUTE(results_directory,\"\\\",\"/\"),\"Inconsistency \",REresults_name,TEXT(date_time,\" m d yyyy h mm ss AM/PM\"),\".txt')\"),\"\")","v":"save('C:/WinBUGS Results/Inconsistency Random Effect Results (Vague ) 10 21 2014 1 03 34 PM.txt')"}]
[{"$f":"IF(auto_run,CONCATENATE(\"save('\",SUBSTITUTE(results_directory,\"\\\",\"/\"),\"Inconsistency \",REresults_name,TEXT(date_time,\" m d yyyy h mm ss AM/PM\"),\".odc')\"),\"\")","v":"save('C:/WinBUGS Results/Inconsistency Random Effect Results (Vague ) 10 21 2014 1 03 34 PM.odc')"}]
["quit()"]

{"sheet":"FE Model","index":24,"n_rows":60,"n_cols":8,"rows_kept":60,"cut":false,"hidden":false,"merged":[]}
["model{",null,null,"# this code for this model was adapted from WinBUGS code from the multi-parameter Evidence Synthesis Research Group at the University of Bristol:  Website: www.bris.ac.uk/cobm/research/mpes"]
[null,"for(i in 1:NS)"]
[null," { "]
[null,"  "]
[null,"     mu[i] ~ dnorm(0,.0001)                                                   # vague priors for baselines",null,null,null,null,"# vague priors for all trial baselines"]
[null,"     for (k in 1:na[i])  ",null,null,null,null,"# LOOP THROUGH ARMS"]
[null,null,"{ "]
[null,null,"r[i,k] ~ dbin(p[i,k],n[i,k])                                                     # binomial likelihood"]
["            ",null,"logit(p[i,k]) <- mu[i] + d[t[i,k]] - d[t[i,1]]",null,null,null,null,"# model for linear predictor"]
[null,null,"rhat[i,k] <- p[i,k] * n[i,k]",null,null,null,null,"# expected value of the numerators "]
[null,null,"#Deviance contribution"]
[null,null,"dev[i,k] <- 2 * (r[i,k] * (log(r[i,k])-log(rhat[i,k])) +  (n[i,k]-r[i,k]) * (log(n[i,k]-r[i,k]) - log(n[i,k]-rhat[i,k])))"]
[null,null,"}                                                                "]
[null,"resdev[i] <- sum(dev[i,1:na[i]])",null,null,null,"# summed residual deviance contribution for this trial"]
[" "," }   "]
[null,"totresdev <- sum(resdev[])      # Total Residual Deviance"]
[]
[null,"d[1]<-0"]
[]
[null,"for (k in 2:NT)"]
[null,"{"]
[null,null,"d[k] ~ dnorm(0,.0001) #  vague priors for basic parameters"]
[null,"}                       "]
[]
[" "]
[null,"# ranking best and probability"]
[null,"for (k in 1:NT) "]
[null,"{ "]
[null,null,{"$f":"IF(events_bad,\"\",\"rk[k]<-NT+1-rank(d[],k)\")","v":""},null,null,"#events good"]
[null,null,{"$f":"IF(events_bad,\"rk[k]<- rank(d[],k)\",\"\")","v":"rk[k]<- rank(d[],k)"},null,null,"#events bad"]
["   ",null,"best[k]<-equals(rk[k],1)"]
[]
[null,null,"for (h in 1:NT)"]
[null,null,"{"]
[null,null,null,"prob[k,h]<-equals(rk[k],h)"]
[null,null,"}"]
[null,"}"]
[null,"for (k in 1:NT) "]
[null,"{ "]
[null,null,"for (h in 1:NT)"]
[null,null,"{"]
[null,null,null,"cumeffectiveness[k,h]<-sum(prob[k,1:h])   # The cumulative ranking probability of treatment i to be among the j best treatments."]
[null,null,"}"]
[null,"}"]
[null,"for(i in 1:NT)"]
[null,"{"]
[null,"          SUCRA[i]<-sum(cumeffectiveness[i,1:(NT-1)])/(NT-1) # The surface under the cumulative rankings for treatment i."]
[null,"}"]
[]
[null,"# pairwise ORs "]
[null,"for (c in 1:(NT-1)) "]
[null,"{  "]
[null,null,"for (k in (c+1):NT)  "]
[null,null,"{ "]
[null,null,null,"OR[c,k] <- exp(d[k] - d[c] )"]
[null,null,null,"lOR[c,k]<-d[k]-d[c]"]
[null,null,"}  "]
[null,"}"]
[]
["}","#END Program"]

{"sheet":"Fixed Effects","index":25,"n_rows":200,"n_cols":20,"rows_kept":200,"cut":false,"hidden":true,"merged":[[2,5,2,11],[2,13,2,19]]}
[{"$f":"RIGHT(CELL(\"filename\",A1),LEN(CELL(\"filename\",A1))-FIND(\"]\",CELL(\"filename\",A1)))","v":"Fixed Effects"}]
[]
[null,null,null,null,null,{"$f":"\"Fixed Effects\"","v":"Fixed Effects"},null,null,null,null,null,null,null,{"$f":"\"Fixed Effects\"","v":"Fixed Effects"}]
["Treatment Name","Treatment #","Rank",null,"Treatmen 1","Treatment 2","Treatment Comparisons","2.5% Cr.I.","Median","97.5% Cr.I.",{"$f":"$N$4 &\" (95% Cr.I.)\"","v":"O.R. (95% Cr.I.)"},{"$f":"$N$4 &\" (95% Cr.I.)\"","v":"O.R. (95% Cr.I.)"},null,{"$f":"IF(Forest=\"RR\", \"R.R\",\"O.R.\")","v":"O.R."},"Treatment Comparisons","2.5% CI","Median","97.5% CI","Treatment 1","Treatment 2"]
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{"sheet":"RE Model","index":26,"n_rows":74,"n_cols":9,"rows_kept":74,"cut":false,"hidden":false,"merged":[]}
["model",null,null,"# this code for this model was adapted from WinBUGS code from the multi-parameter Evidence Synthesis Research Group at the University of Bristol:  Website: www.bris.ac.uk/cobm/research/mpes"]
["{"]
[null,"for(i in 1:NS)"]
[null,"{ "]
["        "," w[i,1] <-0",null,"# adjustment for multi-arm trials is zero for control arm"]
[null,"         delta[i,1]<-0",null,"# treatment effect is zero for control arm"]
[null,"         mu[i] ~ dnorm(0,.0001)                                                ",null,null,null,null,"# vague priors for all trial baselines"]
[null,"         for (k in 1:na[i])  ",null,null,null,null,"# LOOP THROUGH ARMS"]
[null,null," { "]
[null,"         ","r[i,k] ~ dbin(p[i,k],n[i,k]) ",null,null,null,"# binomial likelihood"]
["             ",null,"logit(p[i,k]) <- mu[i] + delta[i,k]  ",null,null,null,"# model for linear predictor"]
["            ",null,"rhat[i,k] <- p[i,k] * n[i,k]  ",null,null,null,"# expected value of the numerators "]
[null,"          ","#Deviance contribution"]
[null,null," dev[i,k] <- 2 * (r[i,k] * (log(r[i,k])-log(rhat[i,k]))   +  (n[i,k]-r[i,k]) * (log(n[i,k]-r[i,k]) - log(n[i,k]-rhat[i,k]))) "]
[null,null,"}                                                                "]
[null,null,"resdev[i] <- sum(dev[i,1:na[i]])",null,null,null,"#  summed residual deviance contribution for this trial"]
[null,null,"for (k in 2:na[i]) ",null,null,null," # LOOP THROUGH ARMS"]
[null,null,"{"]
["          ",null,"delta[i,k] ~ dnorm(md[i,k],taud[i,k])",null,null,null,"# trial-specific LOR distributions"]
["          ",null,"md[i,k] <-  d[t[i,k]] - d[t[i,1]] + sw[i,k]",null,null,null,"# mean of LOR distributions (with multi-arm trial correction)"]
["            ",null,"taud[i,k] <- tau *2*(k-1)/k",null,null,null,"# precision of LOR distributions (with multi-arm trial correction)"]
["             ",null,"w[i,k] <- (delta[i,k] - d[t[i,k]] + d[t[i,1]])",null,null,null,"# adjustment for multi-arm RCTs"]
["              ",null,"sw[i,k] <- sum(w[i,1:k-1])/(k-1)",null,null,null,"# cumulative adjustment for multi-arm trials"]
[null,null,"}"]
[" ","}   "]
[null,"totresdev <- sum(resdev[])",null,null,"# Total Residual Deviance"]
[]
[null,"d[1]<-0"]
[null,"for (k in 2:NT)"]
[null,"{"]
[null,null,"d[k] ~ dnorm(0,.0001) #  vague priors for basic parameters"]
[null,"}                       "]
[null,{"$f":"IF(vague_prior,\"sd~dunif(0,2)   \",\"\")","v":"sd~dunif(0,2)   "},null,null,null,null,null,null," #  vague prior for random effects standard deviation"]
[null,{"$f":"IF(vague_prior,\"tau<-1/pow(sd,2)\",\"\")","v":"tau<-1/pow(sd,2)"},null,null,null,null,null,null," #  vague prior for random effects standard deviation"]
[null,{"$f":"IF(NOT(vague_prior),\"var ~ dlnorm(\"&INDEX(prior_mean, MATCH(outcome_selection,outcome_type,0),MATCH(intervention_selection,intervention_type,0))&\",\"&ROUND(1/INDEX(prior_sigma, MATCH(outcome_selection,outcome_type,0),MATCH(intervention_selection,intervention_type,0)),4)&\") \",\"\")","v":""},null,null,null,null,null,null,"# Informative log-normal prior  for heterogeneity variance parameter tau - Turner 2012"]
[null,{"$f":"IF(NOT(vague_prior),\"tau<-1/var # between-trial precision (1/between-trial variance)\",\"\")","v":""},null,null,null,null,null,null,"# Informative log-normal prior  for heterogeneity variance parameter tau - Turner 2012"]
[null,{"$f":"IF(NOT(vague_prior),\"sd <- pow(tau,-0.5)\",\"\")","v":""},null,null,null,null,null,null,"# Informative log-normal prior  for heterogeneity variance parameter tau - Turner 2012"]
[]
[]
[null,"# Treatment 1 baseline, based on average of NP trials including it. "]
[]
[null,"# ranking "]
[null,"for (k in 1:NT) "]
[null,"{ "]
[null,null,{"$f":"IF(events_bad,\"\",\"rk[k]<-NT+1-rank(d[],k)\")","v":""},null,null,"# events good"]
[null,null,{"$f":"IF(events_bad,\"rk[k]<- rank(d[],k)\",\"\")","v":"rk[k]<- rank(d[],k)"},null,null,"# events bad"]
[null,null,"best[k]<-equals(rk[k],1)"]
[null,null,"for (h in 1:NT)"]
[null,null,"{"]
[null,null,null,"prob[k,h]<-equals(rk[k],h)"]
[null,null,"}"]
[null,"}"]
[null,"for (k in 1:NT) "]
[null,"{ "]
[null,null,"for (h in 1:NT)"]
[null,null,"{"]
[null,null,null,"cumeffectiveness[k,h]<-sum(prob[k,1:h])   # The cumulative ranking probability of treatment i to be among the j best treatments."]
[null,null,"}"]
[null,"}"]
[null,"for(i in 1:NT)"]
[null,"{"]
[null,"          SUCRA[i]<-sum(cumeffectiveness[i,1:(NT-1)])/(NT-1) # The surface under the cumulative rankings for treatment i."]
[null,"}"]
[null,"# pairwise ORs"]
[null,"for (c in 1:(NT-1)) "]
[null,"{  "]
[null,null,"for (k in (c+1):NT)  "]
[null,null,"{"]
[null,null,null,"OR[c,k] <- exp(d[k] - d[c] )"]
[null,null,null,"lOR[c,k]<-d[k]-d[c]"]
[null,null,"}  "]
[null,"}"]
[]
["}","#END Program"]

{"sheet":"League Table Data","index":27,"n_rows":200,"n_cols":20,"rows_kept":200,"cut":false,"hidden":true,"merged":[[2,13,2,19],[2,5,2,11]]}
[{"$f":"RIGHT(CELL(\"filename\",A1),LEN(CELL(\"filename\",A1))-FIND(\"]\",CELL(\"filename\",A1)))","v":"League Table Data"}]
[]
[]
["Treatment Name","Treatment #","Rank",null,"Treatmen 1","Treatment 2","Treatment Comparisons","2.5% Cr.I.","Median","97.5% Cr.I.",{"$f":"$N$4 &\" (95% Cr.I.)\"","v":"O.R. (95% Cr.I.)"},{"$f":"$N$4 &\" (95% Cr.I.)\"","v":"O.R. (95% Cr.I.)"},null,{"$f":"IF(Forest=\"RR\", \"R.R\",\"O.R.\")","v":"O.R."},"Treatment Comparisons","2.5% CI","Median","97.5% CI","Treatment 1","Treatment 2"]
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{"sheet":"Random Effects  (Informative)","index":28,"n_rows":200,"n_cols":20,"rows_kept":200,"cut":false,"hidden":true,"merged":[[2,5,2,11],[2,13,2,19]]}
[{"$f":"RIGHT(CELL(\"filename\",A1),LEN(CELL(\"filename\",A1))-FIND(\"]\",CELL(\"filename\",A1)))","v":"Random Effects  (Informative)"}]
[{"$f":"CONCATENATE(\"Heterogeneity (Inform.) = \",INDEX('RE Results (Informative Prior)'!B:H,MATCH(\"sd\",'RE Results (Informative Prior)'!B:B,0),6), \" \n95% CrI (\",INDEX('RE Results (Informative Prior)'!B:H,MATCH(\"sd\",'RE Results (Informative Prior)'!B:B,0),5),\" – \",INDEX('RE Results (Informative Prior)'!B:H,MATCH(\"sd\",'RE Results (Informative Prior)'!B:B,0),7),\")\")","v":{"$error":"#N/A"}}]
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["Treatment Name","Treatment #","Rank",null,"Treatmen 1","Treatment 2","Treatment Comparisons","2.5% Cr.I.","Median","97.5% Cr.I.",{"$f":"$N$4 &\" (95% Cr.I.)\"","v":"O.R. (95% Cr.I.)"},{"$f":"$N$4 &\" (95% Cr.I.)\"","v":"O.R. (95% Cr.I.)"},null,{"$f":"IF(Forest=\"RR\", \"R.R\",\"O.R.\")","v":"O.R."},"Treatment Comparisons","2.5% CI","Median","97.5% CI","Treatment 1","Treatment 2"]
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{"sheet":"FE Inconsistency Model","index":30,"n_rows":30,"n_cols":4,"rows_kept":30,"cut":false,"hidden":false,"merged":[]}
[]
["#Fixed effects model for multi-arm trials (any number of arms) - developed based on WinBUGS code from  Multi-parameter Evidence Synthesis Research Group at the University of Bristol  Website: www.bris.ac.uk/cobm/research/mpes"]
["model        "]
["{ "]
[null,"for(i in 1:NS)            # LOOP THROUGH STUDIES "]
[null,"{  "]
[null,null,"mu[i]~ dnorm(0,.0001)      # vague priors for trial baselines "]
[null,null,"for (k in 1:na[i])      # LOOP THROUGH ARMS "]
[null,null,"{ "]
[null,null,null,"r[i,k] ~ dbin(p[i,k],n[i,k])        # binomial likelihood "]
[null,null,null,"logit(p[i,k]) <- mu[i] + d[t[i,1],t[i,k]]    #model for linear predictor "]
[null,null,null,"rhat[i,k]<- p[i,k] * n[i,k]     # expected value of the numerators "]
[null,null,null,"dev[i,k] <- 2* (r[i,k] * (log(r[i,k])-log(rhat[i,k])) + (n[i,k]-r[i,k]) *(log(n[i,k]-r[i,k]) - log(n[i,k]-rhat[i,k]))) #Deviance contribution "]
[]
[null,null,"} "]
[null,null,"resdev[i] <- sum(dev[i,1:na[i]])   # summed residual deviance contribution for this trial "]
[null,"} "]
[null,"totresdev <- sum(resdev[])       # Total Residual Deviance "]
[null,"for (k in 1:NT)      # set effects of k vs k to zero "]
[null,"{ "]
[null,null,"d[k,k]<- 0 "]
[null,"}"]
[null,"for (c in 1:(NT-1))       # priors for all mean treatment effects "]
[null,"{ "]
[null,null,"for (k in (c+1):NT)"]
[null,null,"{ "]
[null,null,null," d[c,k] ~ dnorm(0,.0001)"]
[null,null,"}"]
[null,"}"]
["}  #PROGRAM ENDS "]

{"sheet":"RE Inconsistency Model","index":31,"n_rows":33,"n_cols":4,"rows_kept":33,"cut":false,"hidden":false,"merged":[]}
[]
["# Random effects model for multi-arm trials (any number of arms) - developed based on WinBUGS code from  Multi-parameter Evidence Synthesis Research Group at the University of Bristol  Website: www.bris.ac.uk/cobm/research/mpes"]
["model                      # *** PROGRAM STARTS"]
["{"]
[null,"for(i in 1:NS)            # LOOP THROUGH STUDIES"]
[null,"{ "]
[null,null,"delta[i,1]<-0           # treatment effect is zero in control arm"]
[null,null,"mu[i] ~ dnorm(0,.0001)  # vague priors for trial baselines"]
[null,null,"for (k in 1:na[i])     # LOOP THROUGH ARMS"]
[null,null,"{"]
[null,null,null,"r[i,k] ~ dbin(p[i,k],n[i,k]) # binomial likelihood"]
[null,null,null," logit(p[i,k]) <- mu[i] + delta[i,k]  # model for linear predictor"]
[null,null,null,"rhat[i,k] <- p[i,k] * n[i,k] # expected value of the numerators "]
[null,null,null,"dev[i,k] <- 2 * (r[i,k] * (log(r[i,k])-log(rhat[i,k]))  +  (n[i,k]-r[i,k]) * (log(n[i,k]-r[i,k]) - log(n[i,k]-rhat[i,k])))   #Deviance contribution"]
[null,null,"}"]
["          ",null,"resdev[i] <- sum(dev[i,1:na[i]]) # summed residual deviance contribution for this trial"]
[null,null,"for (k in 2:na[i])   # LOOP THROUGH ARMS"]
[null,null,"{"]
[null,null,null,"delta[i,k] ~ dnorm(d[t[i,1],t[i,k]] ,tau) # trial-specific LOR distributions"]
[null,null,"}"]
[null,"  }   "]
[null,"totresdev <- sum(resdev[])   # Total Residual Deviance"]
[null,"for (c in 1:(NT-1))  # priors for all mean treatment effects"]
[null,"{"]
[null,null,"for (k in (c+1):NT)  "]
[null,null,"{ "]
[null,null,null,"d[c,k] ~ dnorm(0,.0001)  "]
[null,null,"}"]
[null,"  }  "]
[null,"sd ~ dunif(0,5)  # vague prior for between-trial standard deviation"]
[null,"var <- pow(sd,2) # between-trial variance"]
[null,"tau <- 1/var     # between-trial precision"]
["} # PROGRAM ENDS"]

{"sheet":"Rankogram Data","index":32,"n_rows":4,"n_cols":17,"rows_kept":4,"cut":false,"hidden":false,"merged":[[2,1,2,9]]}
[]
[]
[]
[null,null,null,null,null,null,null,null,null,null,null,null,"placebo","warfarin-adjusted","aspirin","warfarin-fixed","aspirin+warfarin"]

{"sheet":"Variables","index":33,"n_rows":45,"n_cols":16,"rows_kept":45,"cut":false,"hidden":false,"merged":[]}
[]
[null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,"Vague"]
[null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,"Informative"]
[]
[]
[]
[]
[null,null,"Burn In Runs",{"$f":"'Winbugs Settings '!burn_in","v":1000}]
[null,null,"Model Runs",{"$f":"'Winbugs Settings '!model_runs","v":1000}]
[null,null,"Events are \"BAD\"",true]
[null,null,"Correct for Zero Values",true]
[null,null,"Monitor Odds Ratio ",true]
[null,null,"Monitor Risk Ratio",false]
[null,null,"Monitor Risk Difference",false]
[null,null,"Monitor Number Needed to Treat",false]
[null,null,"Monitor Rank",true]
[null,null,"Monitor Best",true]
[null,null,"Monitor SUCRA",true]
[null,null,"Monitor Rank Probability (Rankogram)",true]
[null,null,"Include Trace for OR",{"$f":"'Winbugs Settings '!trace_or","v":true}]
[null,null,"Include Trace for RR",false]
[null,null,"Include Gelman Rubin for OR",{"$f":"'Winbugs Settings '!gr_or","v":true}]
[null,null,"Include Gelman Rubin for RR",false]
[null,null,"Include DIC",true]
[null,null,"Include Resdev",true]
[null,null,"Intervention Type","Pharmacological vs Control/Placebo"]
[null,null,"Outcome Type","All Cause Mortality"]
[null,null,"Low Range for Inits  (Random and Fixed Effects)",{"$f":"'Winbugs Settings '!inits_low","v":0}]
[null,null,"High range for Inits (Random and Fixed Effects)",{"$f":"'Winbugs Settings '!inits_high","v":2}]
[null,null,"Low range for SD (Random Effects)",{"$f":"'Winbugs Settings '!sd_low","v":1}]
[null,null,"High range for SD (Random Effects)",{"$f":"'Winbugs Settings '!sd_high","v":2}]
[null,null,"Winbugs Directory",{"$f":"'Winbugs Settings '!winbugs_directory","v":"C:\\Program Files\\WinBUGS14\\"}," "]
[null,null,"Data directory",{"$f":"'Winbugs Settings '!data_directory","v":"C:\\WinBUGS data\\"}]
[null,null,"Results Directoty",{"$f":"'Winbugs Settings '!results_directory","v":"C:\\WinBUGS Results\\"}]
[null,null,"Fixed Effects Results File Name",{"$f":"'Winbugs Settings '!FEresults_name","v":"Fixed Effect Results"}]
[null,null,"Random Effects Results File Name",{"$f":"CONCATENATE('Winbugs Settings '!REresults_name, \" (\", IF(vague_prior,\"Vague )\",\"Informative)\"))","v":"Random Effect Results (Vague )"}]
[null,null,"Fixed Effects Model File Name",{"$f":"'Winbugs Settings '!FEmodel_name","v":"Fixed Effect Model"}]
[null,null,"Random Effects Model File Name",{"$f":"CONCATENATE('Winbugs Settings '!REmodel_name, \" (\", IF(vague_prior,\"Vague)\",\"Informative)\"))","v":"Random Effect Model (Vague)"}]
[null,null,"Data Table File Name",{"$f":"'Winbugs Settings '!data_name","v":"Data Table"}]
[null,null,"Data table List File Name",{"$f":"'Winbugs Settings '!datalist_name","v":"Data List"}]
[null,null,"Fixed Effects Inits File name",{"$f":"'Winbugs Settings '!FEinits_name","v":"Fixed Effect Inits"}]
[null,null,"Random Effects (Informative) Inits File name",{"$f":"CONCATENATE('Winbugs Settings '!REVinits_name, \" (\", IF(vague_prior,\"Vague)\",\"Informative)\"))","v":"Random Effect Inits (Vague)"}]
[null,null,"date/time",{"$f":"IF('Winbugs Settings '!date_time,TEXT(NOW(),\" m d yyyy h mm ss AM/PM\"),\"\")","v":" 10 21 2014 1 03 34 PM"}]
[null,null,"Automatically run",true]
[null,null,"Vague Prior",true]